We presented a complete chloroplast genome of Fissidens nobilis which is 124,962 bp long and has four subregions: 86,122 bp of large single-copy (LSC) and 18,708 bp of small single-copy (SSC) regions are separated by 10,066 bp of inverted repeat (IR) regions including 127 genes (82 protein-coding genes, 8 rRNAs, and 37 tRNAs). The overall GC content is 29.2\% and those in the LSC, SSC, and IR regions are 26.6\%, 26.0\%, and 43.5\%, respectively. Phylogenetic trees show that the phylogenetic position of F. nobilis is congruent with the previous phylogenetic study of moss species.